Sunday, July 10, 2011

Optimization of 3D culture cell proliferation - part 4

Three major variables impact the 3D culture proliferation assay: limitations of detection, cell seeding density, and duration of 3D culture. While most established 3D culture protocols should be compatible with this assay, it may be helpful to empirically test and optimize these conditions before commencing pharmacological screening to promote assay sensitivity and reproducibility. This starts by developing a standard curve to determine the limitations for detection for each cell line. Cells should be serially diluted and seeded on ECM-coated stripwells before evaluating each well using the 3D culture cell proliferation assay. Absorbance should be evaluated at 1-, 2-, 3-, and 4-hr time points after adding substrate to determine the optimal incubation period. Background values are subtracted, data averaged, and standard curves plotted. The optimal curve is linear and has the lowest standard deviations. The standard curve will indicate what the highest number of detectable cells are based on the largest value within the linear range; it will also specify the lowest number of detectable cells in each well. These values provide the dynamic range for the assay. Since the ECM may affect cell proliferation rates, a growth curve may also be helpful in determining the optimal duration for 3D culture. Here, seeding densities may be used from an existing model or determined from the standard curve. When making a determination from the standard curve, sensitivity of this assay depends on the number of population doublings and overall absorbance, as a consequence of cell number. In the figure below, the seeding concentration for MDA-MB-231 cells in 3D BME culture is determined to allow for a 20-fold increase in cell number, which is just over five population doublings. The maximum value for the linear standard curve, 100,000 cells, is divided by 20 to give a seeding concentration of 5000 cells per well. Here, the cell doubling rate starts around two days and appears to increase with time, reaching saturation around day six. Since the MDA-MB-231 cells have a doubling rate of approximately 24 hr in traditional 2D cell culture, this represents an initial decrease in proliferation in the 3D BME culture model.



References
1. Birgersdotter, A.; Sandberg, R.; Ernberg, I. Gene expression perturbation in vitro—a growing case for three-dimensional (3-D) culture systems. Semin. Cancer Biol. 2005, 15(5), 405–12.
2. Cukierman, E.; Pankov, R.; Yamada, K.M. Cell interactions with three-dimensional matrices. Curr. Opin. Cell Biol. 2002, 14(5), 633–40.
3. Nelson, C.M.; Bissell, M.J. Of extracellular matrix, scaffolds, and signaling: tissue architecture regulates development, homeostasis, and cancer. Ann. Rev. Cell Dev. Biol. 2006, 22, 287–309.
4. Schuetz, E.G.; Li, D.; Omiecinski, C.J.; Muller-Eberhard, U.; Kleinman, H.K.; Elswick, B.; Guzelian, P.S. Regulation of gene expression in adult rat hepatocytes cultured on a basement membrane matrix. J. Cell Physiol. 1988, 134(3), 309–23.
5. Barcellos-Hoff, M.H.; Aggeler, J.; Ram, T.G.; Bissell, M.J. Functional differentiation and alveolar morphogenesis of primary mammary cultures on reconstituted basement membrane. Development 1989, 105(2), 223–35.
6. Webber, M.M.; Bello, D.; Kleinman, H.K.; Hoffman, M.P. Acinar differentiation by non-malignant immortalized human prostatic epithelial cells and its loss by malignant cells. Carcinogenesis 1997, 18(6), 1225–31.
7. Grant, D.S.; Tashiro, K.; Segui-Real, B.; Yamada, Y.; Martin, G.R.; Kleinman, H.K. Two different laminin domains mediate the differentiation of human endothelial cells into capillary-like structures in vitro. Cell 1989, 58(5), 933–43.
8. Griffith, L.G.; Swartz, M.A. Capturing complex 3-D tissue physiology in vitro. Nat. Rev. Mol. Cell Biol. 2006, 7(3), 211–24.
9. Petersen, O.W.; Ronnov-Jessen, L.; Howlett, A.R.; Bissell, M.J. Interaction with Basement Membrane Serves to Rapidly Distinguish Growth and Differentiation Pattern of Normal and Malignant Human Breast Epithelial Cells. Proceedings of the National Academy of Sciences 1992, 89(19), 9064–8.
10. Fridman, R.; Giaccone, G.; Kanemoto, T.; Martin, G.R.; Gazdar, A.F.; Mulshine, J.L. Reconstituted Basement Membrane (Matrigel) and Laminin Can Enhance the Tumorigenicity and the Drug Resistance of Small Cell Lung Cancer Cell Lines. Proceedings of the National Academy of Sciences 1990, 87(17), 6698–6702.
11. Hodkinson, P.S.; Elliott, T.; Wong, W.S.; Rintoul, R.C.; Mackinnon, A.C.; Haslett, C.; Sethi, T. ECM overrides DNA damage-induced cell cycle arrest and apoptosis in small-cell lung cancer cells through beta1 integrin-dependent activation of PI3-kinase. Cell Death Differ. 2006, 13(10), 1776–88.
12. Pogany, G.; Timar, F.; Olah, J.; Harisi, R.; Polony, G.; Paku, S.; Bocsi, J.; Jeney, A.; Laurie, G.W. Role of the basement membrane in tumor cell dormancy and cytotoxic resistance. Oncology 2001, 60(3), 274–81.

Series brought to you by Trevigen, Inc.

Friday, June 17, 2011

Assessing 3D culture cell proliferation - part 3

The ability of cells to remain viable and proliferate in a physiological environment is one of the most direct measures of cell health, and alterations in these proliferation rates suggest changes to biological processes within the cell. Since these values correlate to the number of cells present at the
time of assay, the data relate to changes in processes governed by cell cycle or cell death. As it is, decreasing the proliferation rate is generally correlated negatively to cell health where there is either a decrease in cell cycle progression or an increase in cell death. Likewise, dramatic increases in cell proliferation rates may be associated with loss of cell cycle control and an increase in disease pathogenesis.

The adaptation of 3D culture for studying cellular proliferation demonstrates that the ECM may impact the pharmacological dose response, and by evaluating cells in the proper context, these models elucidate the potential for drug resistance and accelerate translational research. Neoplastic cells in 3D culture have demonstrated drug resistance to many chemotherapeutic agents including doxorubicin, etoposide, cisplatin, and the nitrogen mustard, (10) and these cultures have been shown to promote resistance to ionizing and ultraviolet radiation as well. (11, 12)
Since cell–matrix interactions are mediated via cell surface receptors, know as integrins, and their subsequent signaling cascades, the search for targets that can abrogate the protective effects of the ECM and sensitize cancers to existing treatment therapies has begun, and these assays will be instrumental in identifying these targets and screening therapeutic compounds. During this process, stripwells from a 96-well plate are coated with ECM proteins which form hydrogels that mimic the tissue microenvironment. When cells are added to these wells, specific interactions between the cell and the ECM proteins induce a change in the cells’ biological program, and as the cells proliferate, they assume structural and functional characteristics as seen in vivo. Figure 1 demonstrates differences in cell morphology and structure formation for normal, MCF-10A, and malignant, MDA-MB-231, mammary epithelial cells cultured in 2D and 3D cultures. The MCF-10A cells grow in discrete cobblestone monolayers on plastic, and form glandular structures when cultured on BME; likewise, the MDA-MB-231 cells grow in spindle-shaped monolayers on plastic and form disorganized masses when cultured on BME. Cells may be monitored via microscopy during the course of the assay to evaluate cell morphology; structure formation; and, to some extent, viability. At the end of the culture, the 3D culture cell proliferation reagent is added to each well, and the viable cells within the well convert the substrate to a yellow product that absorbs at 450 nm. The absorbance can be evaluated in a 96-well plate reader, and the relative proliferation can be determined based on these absorbance values.


Figure 1. 3D cultures promote cell assembly as seen in vivo. The normal mammary epithelial cell line, MCF-10A, grows as a cobblestone monolayer on plastic (a) and forms glandular structures in a 3D BME culture (b). The malignant mammary epithelial cell line, MDAMB-231, grows as spindle-shaped monolayers on plastic (c) and forms a disorganized mass in a 3D BME culture (d).

References
1. Birgersdotter, A.; Sandberg, R.; Ernberg, I. Gene expression perturbation in vitro—a growing case for three-dimensional (3-D) culture systems. Semin. Cancer Biol. 2005, 15(5), 405–12.
2. Cukierman, E.; Pankov, R.; Yamada, K.M. Cell interactions with three-dimensional matrices. Curr. Opin. Cell Biol. 2002, 14(5), 633–40.
3. Nelson, C.M.; Bissell, M.J. Of extracellular matrix, scaffolds, and signaling: tissue architecture regulates development, homeostasis, and cancer. Ann. Rev. Cell Dev. Biol. 2006, 22, 287–309.
4. Schuetz, E.G.; Li, D.; Omiecinski, C.J.; Muller-Eberhard, U.; Kleinman, H.K.; Elswick, B.; Guzelian, P.S. Regulation of gene expression in adult rat hepatocytes cultured on a basement membrane matrix. J. Cell Physiol. 1988, 134(3), 309–23.
5. Barcellos-Hoff, M.H.; Aggeler, J.; Ram, T.G.; Bissell, M.J. Functional differentiation and alveolar morphogenesis of primary mammary cultures on reconstituted basement membrane. Development 1989, 105(2), 223–35.

6. Webber, M.M.; Bello, D.; Kleinman, H.K.; Hoffman, M.P. Acinar differentiation by non-malignant immortalized human prostatic epithelial cells and its loss by malignant cells. Carcinogenesis 1997, 18(6), 1225–31.

7. Grant, D.S.; Tashiro, K.; Segui-Real, B.; Yamada, Y.; Martin, G.R.; Kleinman, H.K. Two different laminin domains mediate the differentiation of human endothelial cells into capillary-like structures in vitro. Cell 1989, 58(5), 933–43.
8. Griffith, L.G.; Swartz, M.A. Capturing complex 3-D tissue physiology in vitro. Nat. Rev. Mol. Cell Biol. 2006, 7(3), 211–24.
9. Petersen, O.W.; Ronnov-Jessen, L.; Howlett, A.R.; Bissell, M.J. Interaction with Basement Membrane Serves to Rapidly Distinguish Growth and Differentiation Pattern of Normal and Malignant Human Breast Epithelial Cells. Proceedings of the National Academy of Sciences 1992, 89(19), 9064–8.
10. Fridman, R.; Giaccone, G.; Kanemoto, T.; Martin, G.R.; Gazdar, A.F.; Mulshine, J.L. Reconstituted Basement Membrane (Matrigel) and Laminin Can Enhance the Tumorigenicity and the Drug Resistance of Small Cell Lung Cancer Cell Lines. Proceedings of the National Academy of Sciences 1990, 87(17), 6698–6702.
11. Hodkinson, P.S.; Elliott, T.; Wong, W.S.; Rintoul, R.C.; Mackinnon, A.C.; Haslett, C.; Sethi, T. ECM overrides DNA damage-induced cell cycle arrest and apoptosis in small-cell lung cancer cells through beta1 integrin-dependent activation of PI3-kinase. Cell Death Differ. 2006, 13(10), 1776–88.
12. Pogany, G.; Timar, F.; Olah, J.; Harisi, R.; Polony, G.; Paku, S.; Bocsi, J.; Jeney, A.; Laurie, G.W. Role of the basement membrane in tumor cell dormancy and cytotoxic resistance. Oncology 2001, 60(3), 274–81.

Series brought to you by Trevigen, Inc.

Friday, June 10, 2011

What is 3D Culture? - part 2

Three-dimensional cultures are in vitro cell culture models in which extracellular matrix (ECM) proteins recapitulate the physiological cell environment to promote cell differentiation and tissue architecture as seen in vivo. These cultures exhibit considerable similarities in their gene expression profiles; morphology; cell–cell and cell–matrix interactions; and differentiation to their originating tissues, while there are significant differences for cells grown on flat 2-D plastic substrata. (1–3) Under 3D culture conditions, epithelial cells organize to resemble their subsequent tissues, (4–6) endothelial cells arrange to form vascular networks, (7) stromal cells maintain a mesenchymal phenotype, (8) and tumor cells assemble into disorganized masses.(9) In these models, the extracellular environment dictates the cellular program and subsequent differentiation and structure formation; thus it is important to select the right ECM proteins based on cell type and function. Cells of epithelial and endothelial origin have an underlying basement membrane orchestrating their growth and development, and this microenvironment is most commonly reconstructed using a basement membrane extract (BME). Alternatively, mesenchymal cells reside in collagen rich connective tissues, and purified collagen I is most commonly used to mimic these surroundings. Other soluble factors may also be necessary to direct cellular differentiation; these include serum, growth factors, hormones, and other cytokines. Most 3D models have optimized conditions to promote proper differentiation, and these parameters can often be found in the scientific literature. Reagents for research utilizing 3D techniques can be found at www.trevigen.com.

References
1. Birgersdotter, A.; Sandberg, R.; Ernberg, I. Gene expression perturbation in vitro—a growing case for three-dimensional (3-D) culture systems. Semin. Cancer Biol. 2005, 15(5), 405–12.

2. Cukierman, E.; Pankov, R.; Yamada, K.M. Cell interactions with three-dimensional matrices. Curr. Opin. Cell Biol. 2002, 14(5), 633–40.

3. Nelson, C.M.; Bissell, M.J. Of extracellular matrix, scaffolds, and signaling: tissue architecture regulates development, homeostasis, and cancer. Ann. Rev. Cell Dev. Biol. 2006, 22, 287–309.

4. Schuetz, E.G.; Li, D.; Omiecinski, C.J.; Muller-Eberhard, U.; Kleinman, H.K.; Elswick, B.; Guzelian, P.S. Regulation of gene expression in adult rat hepatocytes cultured on a basement membrane matrix. J. Cell Physiol. 1988, 134(3), 309–23.

5. Barcellos-Hoff, M.H.; Aggeler, J.; Ram, T.G.; Bissell, M.J. Functional differentiation and alveolar morphogenesis of primary mammary cultures on reconstituted basement membrane. Development 1989, 105(2), 223–35.

6. Webber, M.M.; Bello, D.; Kleinman, H.K.; Hoffman, M.P. Acinar differentiation by non-malignant immortalized human prostatic epithelial cells and its loss by malignant cells. Carcinogenesis 1997, 18(6), 1225–31.

7. Grant, D.S.; Tashiro, K.; Segui-Real, B.; Yamada, Y.; Martin, G.R.; Kleinman, H.K. Two different laminin domains mediate the differentiation of human endothelial cells into capillary-like structures in vitro. Cell 1989, 58(5), 933–43.

8. Griffith, L.G.; Swartz, M.A. Capturing complex 3-D tissue physiology in vitro. Nat. Rev. Mol. Cell Biol. 2006, 7(3), 211–24.

9. Petersen, O.W.; Ronnov-Jessen, L.; Howlett, A.R.; Bissell, M.J. Interaction with Basement Membrane Serves to Rapidly Distinguish Growth and Differentiation Pattern of Normal and Malignant Human Breast Epithelial Cells. Proceedings of the NationalAcademy of Sciences 1992, 89(19), 9064–8.

Tuesday, June 7, 2011

3D Culture Series - Part 1

Over the years, cell-based assays have been used by scientists for evaluating factors affecting disease and designing therapies to treat disease states. More recently, we have learned that the artificial cell environment provided by traditional plastic tissue culture impacts the cells’ biological program, and as a result, the information generated by these studies does not readily translate to living organisms. To address this deficiency, 3D culture models have been constructed that mimic the cells’ natural environment, promoting cellular differentiation as seen within living organisms. In these models, cells assemble into organotypic structures exhibiting both structural and functional features of their emanating tissues. While these models provide great advantages regarding efficacy, the presence of cell scaffolding proteins has complicated the adaptation of traditional techniques for analyzing cell culture.
This series will cover many aspects of 3D Culture including:
  1. Background of 3D Culture
  2. Assessing 3D Culture Cell Proliferation
  3. Optimization of 3D Culture Cell Proliferation
  4. Determining a Dose Response in 3D Culture
Additional information on 3D Products can be found at www.trevigen.com.